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| 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 | 178x 27x 27x 27x 27x 27x 27x 27x 27x 27x 27x 3x 24x 27x 27x 27x 27x 27x 27x 27x 27x 27x 27x 12x 15x 15x 15x 15x 15x 15x 15x 15x 15x 15x 27x 27x 12x 15x 267x 15x 1x 15x 15x 15x 15x 15x 15x 15x | import SUPPORTED_TOOLS from './constants/supportedTools';
import { getDisplayUnit } from './utils';
import getSOPInstanceAttributes from './utils/getSOPInstanceAttributes';
import { utils } from '@ohif/core';
import { getIsLocked } from './utils/getIsLocked';
import { getIsVisible } from './utils/getIsVisible';
const Probe = {
toAnnotation: measurement => {},
/**
* Maps cornerstone annotation event data to measurement service format.
*
* @param {Object} cornerstone Cornerstone event data
* @return {Measurement} Measurement instance
*/
toMeasurement: (
csToolsEventDetail,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType,
customizationService
) => {
const { annotation } = csToolsEventDetail;
const { metadata, data, annotationUID } = annotation;
const isLocked = getIsLocked(annotationUID);
const isVisible = getIsVisible(annotationUID);
Iif (!metadata || !data) {
console.warn('Probe tool: Missing metadata or data');
return null;
}
const { toolName, referencedImageId, FrameOfReferenceUID } = metadata;
const validToolType = SUPPORTED_TOOLS.includes(toolName);
Iif (!validToolType) {
throw new Error('Tool not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
let displaySet;
if (SOPInstanceUID) {
displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points } = data.handles;
const mappedAnnotations = getMappedAnnotations(annotation, displaySetService);
const displayText = getDisplayText(mappedAnnotations, displaySet, customizationService);
const getReport = () =>
_getReport(mappedAnnotations, points, FrameOfReferenceUID, customizationService);
return {
uid: annotationUID,
SOPInstanceUID,
FrameOfReferenceUID,
points,
metadata,
isLocked,
isVisible,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations?.[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
label: data.label,
displayText: displayText,
data: data.cachedStats,
type: getValueTypeFromToolType(toolName),
getReport,
};
},
};
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
const targets = Object.keys(cachedStats);
if (!targets.length) {
return;
}
const annotations = [];
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { value, modalityUnit } = targetStats;
const unit = modalityUnit || '';
annotations.push({
SeriesInstanceUID,
SOPInstanceUID,
SeriesNumber,
frameNumber,
unit,
value,
});
});
return annotations;
}
/*
This function is used to convert the measurement data to a format that is
suitable for the report generation (e.g. for the csv report). The report
returns a list of columns and corresponding values.
*/
function _getReport(mappedAnnotations, points, FrameOfReferenceUID, customizationService) {
const columns = [];
const values = [];
// Add Type
columns.push('AnnotationType');
values.push('Cornerstone:Probe');
mappedAnnotations.forEach(annotation => {
const { value, unit } = annotation;
columns.push(`Probe (${unit})`);
values.push(value);
});
Iif (FrameOfReferenceUID) {
columns.push('FrameOfReferenceUID');
values.push(FrameOfReferenceUID);
}
Iif (points) {
columns.push('points');
values.push(points.map(p => p.join(' ')).join(';'));
}
return {
columns,
values,
};
}
function getDisplayText(mappedAnnotations, displaySet, customizationService) {
const displayText = {
primary: [],
secondary: [],
};
if (!mappedAnnotations || !mappedAnnotations.length) {
return displayText;
}
const { value, unit, SeriesNumber, SOPInstanceUID, frameNumber } = mappedAnnotations[0];
const instance = displaySet.instances.find(image => image.SOPInstanceUID === SOPInstanceUID);
let InstanceNumber;
if (instance) {
InstanceNumber = instance.InstanceNumber;
}
const instanceText = InstanceNumber ? ` I: ${InstanceNumber}` : '';
const frameText = displaySet.isMultiFrame ? ` F: ${frameNumber}` : '';
if (value !== undefined) {
const roundedValue = utils.roundNumber(value, 2);
displayText.primary.push(`${roundedValue} ${getDisplayUnit(unit)}`);
displayText.secondary.push(`S: ${SeriesNumber}${instanceText}${frameText}`);
}
return displayText;
}
export default Probe;
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