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| 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 | 34x 34x 34x 34x 34x 34x 34x 34x | import { classes } from '@ohif/core';
import toolbarButtons from './toolbarButtons';
import { id } from './id.js';
import initToolGroups from './initToolGroups.js';
import setCrosshairsConfiguration from './utils/setCrosshairsConfiguration.js';
import setFusionActiveVolume from './utils/setFusionActiveVolume.js';
import i18n from 'i18next';
const { MetadataProvider } = classes;
const ohif = {
layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',
sopClassHandler: '@ohif/extension-default.sopClassHandlerModule.stack',
thumbnailList: '@ohif/extension-default.panelModule.seriesList',
};
const cs3d = {
viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',
segPanel: '@ohif/extension-cornerstone.panelModule.panelSegmentationNoHeader',
measurements: '@ohif/extension-cornerstone.panelModule.measurements',
};
const tmtv = {
hangingProtocol: '@ohif/extension-tmtv.hangingProtocolModule.ptCT',
petSUV: '@ohif/extension-tmtv.panelModule.petSUV',
tmtv: '@ohif/extension-tmtv.panelModule.tmtv',
};
const extensionDependencies = {
// Can derive the versions at least process.env.from npm_package_version
'@ohif/extension-default': '^3.0.0',
'@ohif/extension-cornerstone': '^3.0.0',
'@ohif/extension-cornerstone-dicom-seg': '^3.0.0',
'@ohif/extension-tmtv': '^3.0.0',
};
const unsubscriptions = [];
function modeFactory({ modeConfiguration }) {
return {
// TODO: We're using this as a route segment
// We should not be.
id,
routeName: 'tmtv',
displayName: i18n.t('Modes:Total Metabolic Tumor Volume'),
/**
* Lifecycle hooks
*/
onModeEnter: ({ servicesManager, extensionManager, commandsManager }: withAppTypes) => {
const {
toolbarService,
toolGroupService,
customizationService,
hangingProtocolService,
displaySetService,
} = servicesManager.services;
const utilityModule = extensionManager.getModuleEntry(
'@ohif/extension-cornerstone.utilityModule.tools'
);
const { toolNames, Enums } = utilityModule.exports;
// Init Default and SR ToolGroups
initToolGroups(toolNames, Enums, toolGroupService, commandsManager);
const { unsubscribe } = toolGroupService.subscribe(
toolGroupService.EVENTS.VIEWPORT_ADDED,
() => {
// For fusion toolGroup we need to add the volumeIds for the crosshairs
// since in the fusion viewport we don't want both PT and CT to render MIP
// when slabThickness is modified
const { displaySetMatchDetails } = hangingProtocolService.getMatchDetails();
setCrosshairsConfiguration(
displaySetMatchDetails,
toolNames,
toolGroupService,
displaySetService
);
setFusionActiveVolume(
displaySetMatchDetails,
toolNames,
toolGroupService,
displaySetService
);
}
);
unsubscriptions.push(unsubscribe);
toolbarService.addButtons(toolbarButtons);
toolbarService.createButtonSection('primary', [
'MeasurementTools',
'Zoom',
'WindowLevel',
'Crosshairs',
'Pan',
]);
toolbarService.createButtonSection('measurementSection', [
'Length',
'Bidirectional',
'ArrowAnnotate',
'EllipticalROI',
]);
toolbarService.createButtonSection('ROIThresholdToolbox', ['SegmentationTools']);
toolbarService.createButtonSection('segmentationToolboxToolsSection', [
'RectangleROIStartEndThreshold',
'BrushTools',
]);
toolbarService.createButtonSection('brushToolsSection', ['Brush', 'Eraser', 'Threshold']);
customizationService.setCustomizations({
'panelSegmentation.tableMode': {
$set: 'expanded',
},
'panelSegmentation.onSegmentationAdd': {
$set: () => {
commandsManager.run('createNewLabelmapFromPT');
},
},
});
// For the hanging protocol we need to decide on the window level
// based on whether the SUV is corrected or not, hence we can't hard
// code the window level in the hanging protocol but we add a custom
// attribute to the hanging protocol that will be used to get the
// window level based on the metadata
hangingProtocolService.addCustomAttribute(
'getPTVOIRange',
'get PT VOI based on corrected or not',
props => {
const ptDisplaySet = props.find(imageSet => imageSet.Modality === 'PT');
Iif (!ptDisplaySet) {
return;
}
const { imageId } = ptDisplaySet.images[0];
const imageIdScalingFactor = MetadataProvider.get('scalingModule', imageId);
const isSUVAvailable = imageIdScalingFactor && imageIdScalingFactor.suvbw;
Iif (isSUVAvailable) {
return {
windowWidth: 5,
windowCenter: 2.5,
};
}
return;
}
);
},
onModeExit: ({ servicesManager }: withAppTypes) => {
const {
toolGroupService,
syncGroupService,
segmentationService,
cornerstoneViewportService,
uiDialogService,
uiModalService,
} = servicesManager.services;
unsubscriptions.forEach(unsubscribe => unsubscribe());
uiDialogService.hideAll();
uiModalService.hide();
toolGroupService.destroy();
syncGroupService.destroy();
segmentationService.destroy();
cornerstoneViewportService.destroy();
},
validationTags: {
study: [],
series: [],
},
isValidMode: ({ modalities, study }) => {
const modalities_list = modalities.split('\\');
const invalidModalities = ['SM'];
const isValid =
modalities_list.includes('CT') &&
study.mrn !== 'M1' &&
modalities_list.includes('PT') &&
!invalidModalities.some(modality => modalities_list.includes(modality)) &&
// This is study is a 4D study with PT and CT and not a 3D study for the tmtv
// mode, until we have a better way to identify 4D studies we will use the
// StudyInstanceUID to identify the study
// Todo: when we add the 4D mode which comes with a mechanism to identify
// 4D studies we can use that
study.studyInstanceUid !== '1.3.6.1.4.1.12842.1.1.14.3.20220915.105557.468.2963630849';
// there should be both CT and PT modalities and the modality should not be SM
return {
valid: isValid,
description: 'The mode requires both PT and CT series in the study',
};
},
routes: [
{
path: 'tmtv',
/*init: ({ servicesManager, extensionManager }) => {
//defaultViewerRouteInit
},*/
layoutTemplate: () => {
return {
id: ohif.layout,
props: {
leftPanels: [ohif.thumbnailList],
leftPanelResizable: true,
leftPanelClosed: true,
rightPanels: [tmtv.tmtv, tmtv.petSUV],
rightPanelResizable: true,
viewports: [
{
namespace: cs3d.viewport,
displaySetsToDisplay: [ohif.sopClassHandler],
},
],
},
};
},
},
],
extensions: extensionDependencies,
hangingProtocol: tmtv.hangingProtocol,
sopClassHandlers: [ohif.sopClassHandler],
...modeConfiguration,
};
}
const mode = {
id,
modeFactory,
extensionDependencies,
};
export default mode;
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